Reverse phase protein array data of siRNA transfected cell line
Read, annotate and normalize reverse phase protein array data and get a brief overview on the biological impact.
Draw a heatmap with column side colors from a RPPA data
Scatter Plots from an RPPA data
Reverse phase protein array data from original cancer specimen
Calculates sample concentrations using sigmoid model fit
Normalizes data in an RPPA data list
Select the highest concentration from serialy diluted samples
sample description file
GenePix result files
Remove arrays from a RPPA data list
Sigmoidal curve prediction.
Selects the measurement samples from an RPPA data list
Draws boxplots of groups of an RPPA data set including wilcox or kruskal test.
Calculates sample concentrations using linear model fit
writes an RPPA data list into csv file
Reverse phase protein array rawdata, samples serially diluted
Aggregate the replicates in an RPPA data set
Average biological replicates over different slides.
Calculates the concentration of serial diluted samples
Estimates error model parameters var0 (basal variance) and varR (relative variance) and produces a new data.frame with the signals and error model parameters.
qq-plot and qq-line of an RPPA data set
Reverse phase protein array data, samples from a stimulation time course
Reverse phase protein array rawdata, samples serially diluted
Dilution series intersect correction
Multiplot function for RPPA time course datasets
Plot target and blank signal from RPPA control samples
Convert RPPA data into Expression Set
Draw time course from RPPA data
Tests for correlations in RPPA data
Draws boxplots of groups of an RPPA data set.
slide description file
sample description file
Corrects for background in an RPPA data set
Selects samples from RPPA data
Logarithmize (log2) the first two RPPA list elements, i.e. foreground and background signal intensities
Read and Annotate RPPA rawdata
slide description file
Data preprocessing