GenePix result files
Reverse phase protein array rawdata, samples serially diluted
Dilution series intersect correction
Reverse phase protein array data of siRNA transfected cell line
Reverse phase protein array data, samples from a stimulation time course
Calculates sample concentrations using linear model fit
Select the highest concentration from serialy diluted samples
Draws boxplots of groups of an RPPA data set.
Logarithmize (log2) the first two RPPA list elements, i.e. foreground and background signal intensities
Plot target and blank signal from RPPA control samples
Selects the measurement samples from an RPPA data list
Draw a heatmap with column side colors from a RPPA data
sample description file
Aggregate the replicates in an RPPA data set
sample description file
Draw time course from RPPA data
Data preprocessing
Corrects for background in an RPPA data set
Calculates sample concentrations using sigmoid model fit
Read and Annotate RPPA rawdata
Normalizes data in an RPPA data list
Average biological replicates over different slides.
Calculates the concentration of serial diluted samples
Reverse phase protein array rawdata, samples serially diluted
Estimates error model parameters var0 (basal variance) and varR (relative variance) and produces a new data.frame with the signals and error model parameters.
Scatter Plots from an RPPA data
writes an RPPA data list into csv file
Read, annotate and normalize reverse phase protein array data and get a brief overview on the biological impact.
Multiplot function for RPPA time course datasets
Convert RPPA data into Expression Set
Selects samples from RPPA data
qq-plot and qq-line of an RPPA data set
slide description file
Draws boxplots of groups of an RPPA data set including wilcox or kruskal test.
slide description file
Sigmoidal curve prediction.
Remove arrays from a RPPA data list
Reverse phase protein array data from original cancer specimen
Tests for correlations in RPPA data