stemCords

internal function that generates coordinates for an RNA secondary structure stem

 RNA 

 stem 

Functions for creating and manipulating RNA secondary structure plots.

Jonathan Price

RRNA

Secondary Structure Plotting for RNA

JP Bida

stemCords function

<dl> <dt>input</dt>
<dd>ct file as data frame</dd> <dt>p1</dt>
<dd>index of nucleotide in first base pair of the stem</dd> <dt>p2</dt>
<dd>index of nucleotide in first base pair of the stem</dd> <dt>x1</dt>
<dd>x coordinate of p1</dd> <dt>y1</dt>
<dd>y coordinate of p1</dd> <dt>x2</dt>
<dd>x coordinate of p2</dd> <dt>y2</dt>
<dd>y coordinate of p2</dd> <dt>x3</dt>
<dd>direction vector x component</dd> <dt>y3</dt>
<dd>direction vector y component</dd></dl>

Arguments

Author

internal function that generates coordinates for a stem — stemCords

<dl>

 <dt>input</dt>
<dd>ct file as data frame</dd>

 <dt>p1</dt>
<dd>index of nucleotide in first base pair of the stem</dd>

 <dt>p2</dt>
<dd>index of nucleotide in first base pair of the stem</dd>

 <dt>x1</dt>
<dd>x coordinate of p1</dd>

 <dt>y1</dt>
<dd>y coordinate of p1</dd>

 <dt>x2</dt>
<dd>x coordinate of p2</dd>

 <dt>y2</dt>
<dd>y coordinate of p2</dd>

 <dt>x3</dt>
<dd>direction vector x component</dd>

 <dt>y3</dt>
<dd>direction vector y component</dd>

</dl>

stemCords: internal function that generates coordinates for a stem

Description

Usage

Value

Arguments

Author

See Also

Examples