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RRNA

R package for creating and manipulating RNA secondary structure plots

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Version

Install

install.packages('RRNA')

Monthly Downloads

271

Version

1.2

License

GPL-3

Maintainer

Jonathan Price

Last Published

July 10th, 2024

Functions in RRNA (1.2)

Internal function to translate and rotate a secondary structure plot

internal function for translating points

removes pseudoknots from a ct file

Internal function for moving through secondary structures

Generic RNA Secondary Structure Plotting Function

make a CT file from a structure and sequence

Alignment of secondary structure folds to 2 nucleotides.

Internal function for finding the coordinates of NT's in a circle

Internal function that generates coordinates for a given loop starting and stopping at p1 and p2 respectfully

RNA secondary structure plotting from CT files

Internal function for moving through secondary structures

Internal function to rotate a single point

internal function to rotate a vector of points

RNA secondary structure ploting

Generate coordinate file

Loads a CT file into an R data frame

creates a knet file from a CT file

Creates a bpl file from a coordinate file

internal function that generates coordinates for a stem

Loads a coordinate file into a data frame

internal function that determines the length of a loop