RSCABS (version 0.9.5)

RSCABS-package: Runs the Rao-Scott adjusted Cochran-Armitage trend test by slices (RSCABS) analysis

Description

This package contains all of the functions necessary to run the RSCABS analysis through the GUI or command line on histopathological data.

Details

• Package:RSCABS

• Type: Package

• Version: 0.01

• Date: 2016-04-21

• License: CC0

References

Green, John W. and Springer, Timothy A. and Saulnier, Amy N. and Swintek, Joe, (2014) Statistical analysis of histopathological endpoints. Environmental Toxicology and Chemistry, 33(5), 1108-1116

Examples

# NOT RUN {
## Not run: 
#Take the subset corresponding to F0-females of 16 weeks of age
# }
# NOT RUN {
data(exampleHistData)
exampleHistData.sub<-exampleHistData[which(exampleHistData$Generation=='F2' & 
	exampleHistData$Genotypic_Sex=='Female' & exampleHistData$Age=='16_wk' ),  ]
#Run RSCABS	
exampleResults<-runRSCABS(exampleHistData.sub,'Treatment','Replicate',test.type='RS')
	
# }
# NOT RUN {
	
# }