Learn R Programming

RSCABS (version 0.9.5)

Rao-Scott Cochran-Armitage by Slices Trend Test

Description

Performs the Rao-Scott Cochran-Armitage by Slices trend test (RSCABS) used in analysis of histopathological endpoints, built to be used with either a GUI or by a command line. The RSCABS method is detailed in "Statistical analysis of histopathological endpoints" by John Green et. al. (2014) .

Copy Link

Version

Install

install.packages('RSCABS')

Monthly Downloads

25

Version

0.9.5

License

CC0

Maintainer

Joe Swintek

Last Published

May 1st, 2020

Functions in RSCABS (0.9.5)

detailedResults2HTML

Saves results as an HTML file

Converts any object that is not zero or a positive number to NA

Checks user inputs

detailedResults2Output

Print results to the GUI window

Cleans data and runs RSCABS when called from the GUI interface

Check the selection for plotting

GUI for analysis of histopathological data

Specify data parameters

Runs the Rao-Scott adjusted Cochran-Armitage trend test by slices (RSCABS) analysis

Other analyses for histopathological endpoints

Plots histopathological data.

Filters problematic data

Window to declare the names of variables and values

Saves a data set

Runs the kth slice of RSCABS

exampleHistData

Example histology data

Plot histopathological data

Attain the name of a directory

Prepares data for an RSCABS analysis

Open a csv file

runDetailedResults

Attain detailed results on an endpoint

Pops up a message

Steps through the severity score for a given effect

Sets the default plotting parameters for RSCABS

Performs the step down aspect of RSCABS

Subset the data used in Histopath

Attain the name of a file to be saved

runEffectSelect

Runs a detailed analysis on an endpoint