segDups


  A list with coordinates of segmental duplications detected by RepeatMasker.
  It is loaded automatically when the repeat bias feature has been turned on (<code>repeatBias=TRUE</code> in function <code>simulateSV</code>).
  (But this dataset is intended for internal use; no need to handle it manually.)


datasets

RSVSim is a package for the simulation of deletions,
insertions, inversion, tandem-duplications and translocations
of various sizes in any genome available as FASTA-file or
BSgenome data package. SV breakpoints can be placed uniformly
accross the whole genome, with a bias towards repeat regions
and regions of high homology (for hg19) or at user-supplied
coordinates.

Christoph Bartenhagen

RSVSim

RSVSim: an R/Bioconductor package for the simulation of
structural variations

segDups function

Format

Downloaded from the UCSC Browser's RepeatMasker track.
  Meyer et al., The UCSC Genome Browser database: extensions and updates 2013, 2013, Nucleic Acids Res, 41(Database issue), 64-69.
  Smit et al., RepeatMasker Open-3.0., 1996-2010, <http: www.repeatmasker.org="">.</http:>

Source

A list with coordinates of segmental duplications detected by RepeatMasker.
  It is loaded automatically when the repeat bias feature has been turned on (<code>repeatBias=TRUE</code> in function <code>simulateSV</code>).
  (But this dataset is intended for internal use; no need to handle it manually.)

segDups: Segmental duplications

Description

Usage

Arguments

Format

Source

Examples