Learn R Programming

RSVSim (version 1.12.0)

RSVSim: an R/Bioconductor package for the simulation of structural variations

Description

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Copy Link

Version

Version

1.12.0

License

LGPL-3

Maintainer

Christoph Bartenhagen

Last Published

February 15th, 2017

Functions in RSVSim (1.12.0)

compareSV

Compare the simulation with a set of SVs
simulateSV

Structural Variant Simulation
weightsRepeats

Weights for repeat region bias
estimateSVSizes

Draw random structural variation sizes from a beta distribution
weightsMechanisms

Weights for SV formation mechanisms
segDups

Segmental duplications