weightsRepeats


  The default weights of all supported repeat regions for all supported SV formation mechanisms.
  It is loaded automatically when the repeat bias feature has been turned on (<code>repeatBias=TRUE</code> in function <code>simulateSV</code>).
  (But this dataset is intended for internal use; no need to handle it manually.)


datasets

RSVSim is a package for the simulation of deletions,
insertions, inversion, tandem-duplications and translocations
of various sizes in any genome available as FASTA-file or
BSgenome data package. SV breakpoints can be placed uniformly
accross the whole genome, with a bias towards repeat regions
and regions of high homology (for hg19) or at user-supplied
coordinates.

Christoph Bartenhagen

RSVSim

RSVSim: an R/Bioconductor package for the simulation of
structural variations

weightsRepeats function

Format

The default weights of all supported repeat regions for all supported SV formation mechanisms.
  It is loaded automatically when the repeat bias feature has been turned on (<code>repeatBias=TRUE</code> in function <code>simulateSV</code>).
  (But this dataset is intended for internal use; no need to handle it manually.)

weightsRepeats: Weights for repeat region bias

Description

Usage

Arguments

Format

Examples