makeGroups

A vector indicating membership in a group.


Each row in the returned matrix corresponds to a set of replicate samples.
The number of columns is the size of the largest set of replicates; rows for
smaller sets are padded with -1 values.


This package implements the remove unwanted variation
(RUV) methods of Risso et al. (2014) for the normalization of
RNA-Seq read counts between samples.

Davide Risso

RUVSeq

Remove Unwanted Variation from RNA-Seq Data

makeGroups function

Each row in the returned matrix corresponds to a set of replicate samples.
The number of columns is the size of the largest set of replicates; rows for
smaller sets are padded with -1 values.

Make a matrix suitable for use with RUVSeq methods such as <code><a href="RUVs" rd-options="">RUVs</a></code>.

Make a matrix suitable for use with RUVSeq methods such as <code><a rd-options="" href="/link/RUVs?package=RUVSeq&version=1.6.2" data-mini-rdoc="RUVSeq::RUVs">RUVs</a></code>.

makeGroups: Make a matrix suitable for use with RUVSeq methods such as `RUVs`.

Description

Usage

Arguments

See Also

Examples