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RVAideMemoire (version 0.9-45-2)

Diverse Basic Statistical and Graphical Functions

Description

Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.

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Version

Install

install.packages('RVAideMemoire')

Monthly Downloads

4,000

Version

0.9-45-2

License

GPL-2

Maintainer

Maxime Herv�

Last Published

March 14th, 2015

Functions in RVAideMemoire (0.9-45-2)

byf.qqnorm

QQ-plot for factor levels
fp.test

Fligner-Policello test
fisher.multcomp

Pairwise comparisons using Fisher's exact test
pairwise.to.groups

Letter summary of similarities and differences
perm.t.test

Permutational Student's t-test
PLSDA.VIP

Variable Importance in the Projection (VIP)
chisq.multcomp

Pairwise comparisons after a chi-squared goodness-of-fit test
perm.anova

Permutational Analysis of Variance
mood.medtest

Mood's median test
byf.mqqnorm

QQ-plot for factor levels
pairwise.perm.t.test

Pairwise permutational t tests
RVAideMemoire-package

Diverse Basic Statistical and Graphical Functions
byf.hist

Histogram for factor levels
back.lsmeans

Back-transformation of LSMeans
cor.2comp

Comparison of 2 Pearson's linear correlation coefficients
multinomial.multcomp

Pairwise comparisons after an exact multinomial test
multinomial.test

Exact multinomial test
cramer.test

Cramer's association coefficient
pcor.test

Tests for (semi-)partial association/correlation between paired samples
perm.var.test

Permutational F test to compare two variances
cor.sparse

Correlation between variables and components in sparse multivariate analyses
wilcox.signtest

Wilcoxon sign test
s.corcircle2

Plot of the factorial maps of a correlation circle
MVA.synt

Synthesis quality of multivariate analyses
adonis.II

Type II permutational MANOVA using distance matrices
pairwise.G.test

Pairwise comparisons for proportions using G-tests
mod

Mode
pcor

(Semi-)Partial correlation
scat.cr

"Correlation" of variables to axes in MCA or mix analyses
cv

Coefficient of variation
rating.prob

Observed rating frequencies
chisq.exp

Expected counts for comparison of proportions to given values
LDA.format

Re-formating LDA data
deprecated

Deprecated functions in RVAideMemoire package
cor.conf

Equality of a Pearson's linear correlation coefficient to a given value
fisher.bintest

Fisher's exact test for binary variables
least.rect

Least rectangles linear regression
scat.mix.numeric

Representation of numeric variables in Hill and Smith mix analysis
reg.ci

Confidence intervals of a simple linear regression
plotresid

Simple analysis of model residuals
logis.noise

Creating a nls model for logistic regression from fitted values of a glm model
plotsurvivors

Survivor curve
seq2

Sequence generation
G.bintest

G-test for binary variables
PLSDA.test

Permutational test for the discriminant ability of the factor in PLS-DA
chisq.bintest

Pearson's Chi-squared test for binary variables
cox.resid

Martingale residuals of a Cox model
dendro.gp

Dendrogram and number of groups to be chosen
se

Standard error of the mean
prop.multcomp

Pairwise comparisons after a test for given proportions
DA.valid

Cross-validation in Discriminant Analysis
byf.mshapiro

Shapiro-Wilk test for factor levels
plot1comp.var

Plot of correlation between predictor variables and a single component
user.cont

User defined contrasts for LSMeans
wald.ptheo.test

Wald test for comparison of a proportion to a theoretical value
rating.lsmeans

LSMeans for Cumulative Link (Mixed) Models
scat.mix.categorical

Representation of qualitative variables in Hill and Smith mix analysis
G.multcomp

Pairwise comparisons after a G-test
chisq.theo.bintest

Pearson's Chi-squared test for comparison of response probabilities to given values
PLSDA.ncomp

Graphical help to number of components selection in PLS-DA
plot1comp.ind

Plot of indiviuals and their class on a single axis (component)
ind.contrib

Individual contributions in regression
spearman.ci

Confidence interval of a Spearman's rank correlation coefficient
chisq.bin.exp

Expected counts for comparison of response probabilities to given values
cor.multcomp

Comparison of several Pearson's linear correlation coefficients
CvM.test

Two-sample Cramer-von Mises test
cochran.qtest

Cochran's Q test
mqqnorm

Multivariate normality QQ-Plot
perm.cor.test

Permutational Pearson's correlation test
chisq.theo.multcomp

Pairwise comparisons after a chi-squared test for given probabilities
G.test

G-test
mshapiro.test

Shapiro-Wilk multivariate normality test
byf.shapiro

Shapiro-Wilk test for factor levels
overdisp.glmer

Estimation of overdispersion with glmer models
bootstrap

Bootstrap
pairwise.mood.medtest

Pairwise Mood's median tests
perm.bartlett.test

Permutational Bartlett's test of homogeneity of variances
prop.bin.multcomp

Pairwise comparisons after a test for given probabilities
DA.confusion

Classification error rate of a Discriminant Analysis
logis.fit

Graphical adujstment of a simple binary logistic regression to data
prop.multinom.test

Wald test for comparison of proportions
predict.coadisc

Predict method for CDA
Anova.clm

Anova Tables for Cumulative Link (Mixed) Models
G.theo.multcomp

Pairwise comparisons after a G-test for given probabilities
pairwise.perm.manova

Pairwise permutational MANOVAs
scatter.coa2

Plot of the factorial maps for a correspondence analysis
multinomial.theo.multcomp

Pairwise comparisons after an exact multinomial test for given probabilities
wilcox.paired.multcomp

Non parametric pairwise comparisons for paired data