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Rariant (version 1.8.3)

Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies

Description

The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.

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Version

Version

1.8.3

License

GPL-3

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Maintainer

Julian Gehring

Last Published

February 15th, 2017

Functions in Rariant (1.8.3)

mismatchUtils

Tally processing low-level functions
colorscales

Rariant color scales
tallyBam

Tally a genomic region
evidenceHeatmap

Variant Evidence Heatmap
propTests

Testing Functions
yesNoMaybe

Determine Variant Evidence
ciAssessment

Assessment of CI methods
rariantInspect

Interactive inspection
rariant

Rariant calling functions
plotCIs

Plotting Functions
ciAdjust

CI Adjust
multiCalls

Multi call processing
tallyPlot

Mismatch plot from BAM files
Rariant-package

Rariant package
convertUtils

Position converters
ciUtils

CI Utils
splitSample

Split Sample for Binomial Data
propCIs

Confidence Interval Functions