Rariant (version 1.8.3)

yesNoMaybe: Determine Variant Evidence

Description

Determine the evidence (absence, presence, dontknow) of variants.

Usage

yesNoMaybe(x, null = 0, one = 0.5)

Arguments

x

GRanges with variants, as returned by 'rariant'.

null

Shift consistent with the _absence_ of a variant.

one

Shift consistent with the _presence_ of a variant.

Value

• The same GRanges object as the input 'x', with the factor column 'verdict': 'absent', 'present', 'inbetween', 'dontknow'