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RchivalTag (version 0.1.9)

Analyzing and Interactive Visualization of Archival Tagging Data

Description

A set of functions to generate, access and analyze standard data products from archival tagging data.

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Version

Install

install.packages('RchivalTag')

Monthly Downloads

233

Version

0.1.9

License

GPL (>= 3)

Maintainer

Robert Bauer

Last Published

November 10th, 2023

Functions in RchivalTag (0.1.9)

hist_tad

Time-at-Depth histogram
image_TempDepthProfiles

plots interpolated daily temperature at depth profiles
leaflet_geopos

reads and plots geolocation estimates derived from archival tagging data
plot_data_coverage

Abacus plot to illustrate the data coverage of different data products per tag throughout their deployment period.
merge_histos

merge and/or rebin TAD/TAT-frequency data
hist_tat

Time-at-Temperature histogram
interpolate_TempDepthProfiles

interpolate daily temperature at depth profiles
plot_TS

plot time series data
update_leaflet_elementId

update elementID of the leaflet map to avoid rendering issues in RMarkdown
plot_DepthTempTS

plot Depth Temperature time series data
unmerge_histos

unmerge previously grouped or merged lists of TAD/TAT frequency data
read_histos

reads a TAD/TAT-histogram file from archival tags
read_TS

reads Time Series Data from Archival Tags
read_PDT

read PDT data from archival one or multiple tags
resample_PDT

resample temperature at depth data from interpolated daily temperature at depth profiles or time series data
resample_TS

resample time series data at a lower resolution
simulate_DepthTS

simulate depth time series data
ts2histos

convert depth and temperature time series data to discrete Time-at-Depth and Time-at-Temperature data (histogram data)
classify_DayTime

Classifying the time period of the day
ggplotly_geopos

Converts a ggplot2 object from ggplot_geopos() to plotly
RchivalTag

RchivalTag - Analyzing and Interactive Visualization of Archival Tagging Data
ggboxplot_DepthTS_by_hour

Boxplot on hourly aggregated DepthTS records
dy_DepthTS

plot time series data via the dygraphs interactive time series plotting interface.
get_thermalstrat

estimate thermal stratification indices
ggplot_geopos

reads and plots geolocation estimates derived from archival tagging data
bin_TempTS

bin depth-temperature time series data
combine_histos

combine lists of TAD/TAT frequency data
get_DayTimeLimits

Estimating the timing of sunrise, sunset, astronomical and nautical twilight events