getSeedSets: Identify seed compounds of each organism
Description
Detect a given metabolic network and idendity the seed compounds of each
organism
Usage
getSeedSets(g, threshold = 0)
Arguments
g,
an igraph object which represents a given organism-specific
metaboliic network
threshold,
numeric constant ranges from 0 to 1, default is 0.
Value
a two-length list which consists of network and the seed set
compounds of the given organism-specific metabolic network,
....
Details
All the compound in the same source SCC all equally to be included
in the seed set, each of these compounds was assigned a confidence level,
C=1/(size of souce SCC), denoting the compounds probability of being a
seed. This threshold was used to determin whether a compound should be a
seed.