Rgb (version 1.5.1)

track.bands-class: Class

Description

This class is a variation of the class dedicated to cytogenetic banding, enforcing new drawing parameter defaults and a few specialized methods. Objects can be created by two distincts means :

• Using the corresponding constructors, which work like the track.table constructor.
• Importing a object in an empty object created by a call to new.

Extends

Class , directly. Class , by class , distance 2. Class , by class , distance 2. Class , by class , distance 3. Class , by class , distance 4. All reference classes extend and inherit methods from .

Fields

The following fields are inherited (from the corresponding class):

• assembly ()
• checktrack ()
• colCount ()
• colIterator ()
• colNames ()
• colReferences ()
• index ()
• name ()
• organism ()
• parameters ()
• rowCount ()
• rowNamed ()
• rowNames ()
• sizetrack ()
• subtrack ()
• values ()

Methods

The following methods are inherited (from the corresponding class):

• addArms ()
• addColumn ()
• addDataFrame ()
• addEmptyRows ()
• addList ()
• addVectors ()
• buildCalls ()
• buildGroupPosition ()
• buildGroupSize ()
• buildIndex ()
• callParams ()
• callSuper ()
• check ()
• chromosomes ()
• coerce ()
• colOrder ()
• copy ()
• cross ()
• defaultParams (, overloaded)
• delColumns ()
• draw ()
• erase ()
• eraseArms ()
• export ()
• extract ()
• field ()
• fill ()
• fix.param ()
• getChromEnd ()
• getClass ()
• getColCount ()
• getColNames ()
• getLevels ()
• getName ()
• getParam ()
• getRefClass ()
• getRowCount ()
• getRowNames ()
• import ()
• indexes ()
• initFields ()
• initialize ()
• isArmed ()
• metaFields ()
• rowOrder ()
• segMerge ()
• segOverlap ()
• setColNames ()
• setLevels ()
• setName ()
• setParam ()
• setRowNames ()
• show (, overloaded)
• size ()
• slice ()
• trace ()
• types ()
• untrace ()
• usingMethods ()

See Also

track.table-class, track.table track.bands, track.bands.UCSC