Rgb v1.5.1

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The R Genome Browser

Classes and methods to efficiently handle (slice, annotate, draw ...) genomic features (such as genes or transcripts), and an interactive interface to browse them.

Readme

R genome browser

R package to efficiently browse and handle genomic data.

Availability

A short presentation of the project can be found on my personnal website.

Release sources and builds can be found in the CRAN repository :

Development sources are freely available on GitHub :

All this material is freely distributed under the GNU Public License 3, shipped with sources and builds.

Support

Bugs, suggestions and help requests should be submitted using GitHub's Issues (see 'Availability').

Changelog

Release updates are tracked by the NEWS.Rd file, browsable on the CRAN repository (see 'Availability').

Individual commits can be followed on GitHub (see 'Availability').

Credits

Sylvain Mareschal <maressyl@gmail.com>

Functions in Rgb

Name Description
draw.points
draw.seq
refTable-class Class
refTable-constructor
Annotation
crossable-class Class
RDT storage files
segMerge
tk.utils
findDrawables
segOverlap
singlePlot
track.genes-class Class
hsFeatures Homo sapiens GRCh37 genomic features
track-constructors
yline
track.table-class Class
tk.convert
tk.tracks
track.fasta-class Class
track.fasta-constructors
draw.steps
drawable-class Class
subtrack
read.gtf
track.bands-class Class
track.exons-class Class
draw.hist
draw.pileup
drawable.list-class Class
drawable.list
track.CNV-class Class
track.bam-class Class
sliceable-class Class
tk.browse
draw.bg
draw.boxes
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Details

Type Package
Date 2017-03-20
URL http://bioinformatics.ovsa.fr/Rgb
BugReports https://github.com/maressyl/R.Rgb/issues
License GPL (>= 3)
NeedsCompilation yes
Packaged 2017-04-20 19:13:51 UTC; sylvain
Repository CRAN
Date/Publication 2017-04-21 05:53:34 UTC

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