ctrlGAlignments


A dataset containing the alignment information on chromosome 1 from the control BAM.
The data object is a GAlignments object containing 3,504,859 hg19 mapped reads.


datasets

Starting with a BAM file, this package provides the
necessary functions for quality assessment, read start position
recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR,
plotting of count data: pairs, log fold-change, codon frequency
and coverage assessment, principal component analysis on codon
coverage.

A Popa

RiboProfiling

Ribosome Profiling Data Analysis: from BAM to Data
Representation and Interpretation

ctrlGAlignments function

A GAlignments object with 3,504,859 reads.

ctrlGAlignments: Ribosome profiling data on chr1 in human primary BJ fibroblasts control data: PMID: 23594524.

Description

Usage

Arguments

Value

Format