codonIndexCovCtrl


A list containing the number of reads for each codon in each ORF.
Codons are reported on their index in the ORF and no information is available about their type/sequence.


datasets

Starting with a BAM file, this package provides the
necessary functions for quality assessment, read start position
recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR,
plotting of count data: pairs, log fold-change, codon frequency
and coverage assessment, principal component analysis on codon
coverage.

A Popa

RiboProfiling

Ribosome Profiling Data Analysis: from BAM to Data
Representation and Interpretation

codonIndexCovCtrl function

Format

A list containing the number of reads for each codon in each ORF.
Codons are reported on their index in the ORF and no information is available about their type/sequence.

codonIndexCovCtrl: The read coverage for each codon in ORFs on chromosome 1, for dataset ctrlGAlignments

Description

Usage

Arguments

Value

Format