clusters

panel.scatter

panel.cor

merge.RGList

takeMeanOverGroups

as.data.frame.cherList

splitAndSimplify

readNimblegenHeader

readNgIntensitiesTxt

normalizeBetweenArraysVSN

relateChers2

oneChannelVSN

exportCCData

pair2xys

alongChromTicks

featureColors

plotAlongChromLegend

newVP

plotOneChIPSample

cbind2,ExpressionSet,ExpressionSet-method


  Called internally by other <code>Ringo</code> functions.
  Normally need not be called by the user.


internal

Ringo-internal

The package Ringo facilitates the primary analysis
of ChIP-chip data. The main functionalities of the package are
data read-in, quality assessment, data visualisation and
identification of genomic regions showing enrichment in ChIP-chip.
The package has functions to deal with two-color oligonucleotide
microarrays from NimbleGen used in ChIP-chip projects, but also
contains more general functions for ChIP-chip data analysis, given
that the data is supplied as RGList (raw)  or ExpressionSet (pre-
processed).
The package employs functions from various other packages of the
Bioconductor project and provides additional ChIP-chip-specific
and NimbleGen-specific functionalities.

J Toedling

Ringo

R Investigation of ChIP-chip Oligoarrays

Ringo-internal function

Called internally by other <code>Ringo</code> functions.
  Normally need not be called by the user.

Internal Ringo functions

Ringo-internal: Internal Ringo functions

Description

Arguments