asExprSet

asExpressionSet

object of class <code>MAList</code> to convert into an
    <code>ExpressionSet</code>

from

string; indicating which column of the <code>genes</code>
    data.frame of the MAList holds the identifier for reporters on the
    microarray. This column, after calling
    <code><a rd-options="base" href="/link/make.names?package=Ringo&version=1.36.0&to=base" data-mini-rdoc="base::make.names">make.names</a></code> on it, will make up the unique
    <code>featureNames</code> of the resulting <code>ExpressionSet</code>.

idColumn


  Function to convert an object of class <code>MAList</code> into an object of
  class <code>ExpressionSet</code>. Note that the otherwise optional
  <code>targets</code> component is required in this case to generate the
  <code>phenoData</code> of the new <code>ExpressionSet</code>.


manip

The package Ringo facilitates the primary analysis
of ChIP-chip data. The main functionalities of the package are
data read-in, quality assessment, data visualisation and
identification of genomic regions showing enrichment in ChIP-chip.
The package has functions to deal with two-color oligonucleotide
microarrays from NimbleGen used in ChIP-chip projects, but also
contains more general functions for ChIP-chip data analysis, given
that the data is supplied as RGList (raw)  or ExpressionSet (pre-
processed).
The package employs functions from various other packages of the
Bioconductor project and provides additional ChIP-chip-specific
and NimbleGen-specific functionalities.

J Toedling

Ringo

R Investigation of ChIP-chip Oligoarrays

asExprSet function

string; indicating which column of the <code>genes</code>
    data.frame of the MAList holds the identifier for reporters on the
    microarray. This column, after calling
    <code><a href="make.names" rd-options="base">make.names</a></code> on it, will make up the unique
    <code>featureNames</code> of the resulting <code>ExpressionSet</code>.

Function to convert an object of class <code>MAList</code> into an object of
  class <code>ExpressionSet</code>. Note that the otherwise optional
  <code>targets</code> component is required in this case to generate the
  <code>phenoData</code> of the new <code>ExpressionSet</code>.

asExprSet: converts a Ringo MAList into an ExpressionSet

Description

Usage

Arguments

Value

See Also

Examples