compute.gc

gccontent

character vector of DNA or probe sequences of
    which the GC content is to be computed

probe.sequences

digits


  Simple auxiliary function to compute the GC content of a given set of
  DNA sequences, such as microarray probe sequences.


manip

The package Ringo facilitates the primary analysis
of ChIP-chip data. The main functionalities of the package are
data read-in, quality assessment, data visualisation and
identification of genomic regions showing enrichment in ChIP-chip.
The package has functions to deal with two-color oligonucleotide
microarrays from NimbleGen used in ChIP-chip projects, but also
contains more general functions for ChIP-chip data analysis, given
that the data is supplied as RGList (raw)  or ExpressionSet (pre-
processed).
The package employs functions from various other packages of the
Bioconductor project and provides additional ChIP-chip-specific
and NimbleGen-specific functionalities.

J Toedling

Ringo

R Investigation of ChIP-chip Oligoarrays

compute.gc function

Simple auxiliary function to compute the GC content of a given set of
  DNA sequences, such as microarray probe sequences.

compute.gc: Compute the GC content of DNA and probe sequences

Description

Usage

Arguments

Value

See Also

Examples