ftr2xys

character; file path of feature report file to convert
    into an xys file

ftr.file

file path to directory where the xys-file should be
    written to; defaults to the current working directory

path


  Auxiliary function to convert a NimbleScan <code>feature-report
    file</code> into a xys-file that can be used with the function
  <code>read.xysfiles</code> of package <code>oligo</code>.


file

The package Ringo facilitates the primary analysis
of ChIP-chip data. The main functionalities of the package are
data read-in, quality assessment, data visualisation and
identification of genomic regions showing enrichment in ChIP-chip.
The package has functions to deal with two-color oligonucleotide
microarrays from NimbleGen used in ChIP-chip projects, but also
contains more general functions for ChIP-chip data analysis, given
that the data is supplied as RGList (raw)  or ExpressionSet (pre-
processed).
The package employs functions from various other packages of the
Bioconductor project and provides additional ChIP-chip-specific
and NimbleGen-specific functionalities.

J Toedling

Ringo

R Investigation of ChIP-chip Oligoarrays

ftr2xys function

Auxiliary function to convert a NimbleScan <code>feature-report
    file</code> into a xys-file that can be used with the function
  <code>read.xysfiles</code> of package <code>oligo</code>.

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ftr2xys: Convert a NimbleScan ftr-file into a xys-file

Description

Usage

Arguments

Value

Details

Examples