nimblegenScale

myRG

further arguments passed on to <code>tukey.biweight</code>


  This function compute the scaled log-ratios from raw probe
  intensities, as done by Nimblegen for scaling of ChIP-chip data.


manip

internal

The package Ringo facilitates the primary analysis
of ChIP-chip data. The main functionalities of the package are
data read-in, quality assessment, data visualisation and
identification of genomic regions showing enrichment in ChIP-chip.
The package has functions to deal with two-color oligonucleotide
microarrays from NimbleGen used in ChIP-chip projects, but also
contains more general functions for ChIP-chip data analysis, given
that the data is supplied as RGList (raw)  or ExpressionSet (pre-
processed).
The package employs functions from various other packages of the
Bioconductor project and provides additional ChIP-chip-specific
and NimbleGen-specific functionalities.

J Toedling

Ringo

R Investigation of ChIP-chip Oligoarrays

nimblegenScale function

This function compute the scaled log-ratios from raw probe
  intensities, as done by Nimblegen for scaling of ChIP-chip data.

nimblegenScale: Function to compute scaled log-ratios

Description

Usage

Arguments

Value

Details

References