relateChers

<code>data.frame</code> holding genomic feature annotation

up to how many bases upstream of annotated genomic
    features should chers be counted as related to that feature (see
    details)

upstream

verbose


  This function relates found 'cher's (ChIP-enriched regions) to
  annotated genomic features, such as transcripts.


manip

The package Ringo facilitates the primary analysis
of ChIP-chip data. The main functionalities of the package are
data read-in, quality assessment, data visualisation and
identification of genomic regions showing enrichment in ChIP-chip.
The package has functions to deal with two-color oligonucleotide
microarrays from NimbleGen used in ChIP-chip projects, but also
contains more general functions for ChIP-chip data analysis, given
that the data is supplied as RGList (raw)  or ExpressionSet (pre-
processed).
The package employs functions from various other packages of the
Bioconductor project and provides additional ChIP-chip-specific
and NimbleGen-specific functionalities.

J Toedling

Ringo

R Investigation of ChIP-chip Oligoarrays

relateChers function

This function relates found 'cher's (ChIP-enriched regions) to
  annotated genomic features, such as transcripts.

relateChers: Relate found Chers to genomic features

Description

Usage

Arguments

Value

Details

Examples