rnb.plot.biseq.coverage

rnbs.set

unique sample identifier. In case <code>rnb.getOption("identifiers.column")</code> 
is not <code>NULL</code>, <code>sample</code> should attain values from the corresponding column, 
or <code>colnames(meth(rnb.set))</code> otherwise

sample

<code>character</code> singleton. If <code>site</code> the coverage
information is plotted for each methylation site. Otherwise
should be one of the regions returned by <code>rnb.region.types</code>

type

flag specifying whether the output should be saved as <code>ReportPlot</code>

writeToFile

if <code>TRUE</code> and <code>writeToFile</code> is <code>TRUE</code>substitute the plot options in the plot file name with digits

numeric.names

if available, the output of <code><a rd-options="" href="/link/rnb.execute.quality?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::rnb.execute.quality">rnb.execute.quality</a></code>

covg.lists

other arguments to <code><a rd-options="" href="/link/createReportPlot?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::createReportPlot">createReportPlot</a></code>


Plots the sequencing coverage of the RnBiseqSet object across the genomic coordinate


RnBeads facilitates comprehensive analysis of various types of DNA
methylation data at the genome scale.

Fabian Mueller

RnBeads

rnb.plot.biseq.coverage function

flag specifying whether the output should be saved as <code><linkS4class>ReportPlot</linkS4class></code>

if available, the output of <code><a href="rnb.execute.quality" rd-options="">rnb.execute.quality</a></code>

other arguments to <code><a href="createReportPlot" rd-options="">createReportPlot</a></code>

Plots the sequencing coverage of the RnBiseqSet object across the genomic coordinate

rnb.plot.biseq.coverage: rnb.plot.biseq.coverage

Description

Usage

Arguments

Value