new("psimi25Source", ...)
label
:"character"
, a
meaningful unique label of the database, does not necessarily have to be
the identifier used in the PSI-MI files. The value is advised to
be overwritten by the objectssourceDb
:"character"
, the
character string used in the PSI-MI files to identify the source
database. The value must be overwritten by the object, depending
on the database identifier used in the PSI-MI file.uniprotSymbol
:"character"
, the
identifier of UniProf reference in "primaryRef" or "secondaryRef"
attributes of the interactors, telling the parser where to find
UniProt symbol of the interactors. The value must be overwritten by
the objects.signature(x = "psimi25Source")
: returns the
source databasesignature(x = "psimi25Source")
: returns the
uniprot identifier of the PSI-MI 2.5 XML file parsePsimi25Interaction
,
parsePsimi25Complex
,
psimi25XML2Graph