RpsiXML (version 2.8.0)

bait: Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type, or neutral component information from an object of psimi25Interaction-class

Description

The functions return bait/prey UniProt identifier of the given psimi25Interaction object.

Usage

bait(x,...) prey(x,...) participant(x,...) inhibitor(x,...) pubmedID(x,...) confidenceValue(x,...) neutralComponent(x,...)

Arguments

x
An object of psimi25Interaction-class, see example
...
Other parameters to control the identifier returned, not implemented yet

Value

The source database identifier is returned.

References

The UniProt database http://www.expasy.uniprot.org/

See Also

psimi25Interaction-class

Examples

Run this code
xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

gridxml <- file.path(xmlDir, "biogrid_200804_test.xml")
gridSet <- parsePsimi25Interaction(gridxml, BIOGRID.PSIMI25)

interExp <- interactions(gridSet)[[1]]
bait(interExp)
prey(interExp)

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