RpsiXML (version 2.8.0)

complexName: Accessor functions for complex

Description

These functions are used to extract useful information of complex in the form of psimi25Complex-class object.

Usage

complexName(x,...)
members(x)
attributesList(x)

Arguments

x

An object of psimi25Complex-class

...

Not implemented yet

Value

complexName

Returns the name of the complex in characters

members

A data frame of protein members building the complex and their information

attributesList

A list of psimi25Attribute objects, recording the attribute name, name accession and value.

Details

See examples

See Also

psimi25Complex-class

Examples

xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml")
intactComplexSet <- parsePsimi25Complex(intactComplexxml, INTACT.PSIMI25)
complexSample <- complexes(intactComplexSet)[[2]]

complexName(complexSample)
attributesList(complexSample)
members(complexSample)

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