processExons

a character string giving the name of input .md file (NCBI annotation file)

filename

a character string specifying the species

species

This R package provides powerful and easy-to-use tools for
analyzing next-gen sequencing read data. Functions of this
package include quality assessment of sequence reads, read
alignment, read summarization, exon-exon junction detection,
fusion detection, detection of short and long indels, absolute
expression calling and SNP calling. This package can be used to
anlayze data generated from all major sequencing platforms such
as Illumina GA/HiSeq/MiSeq, Roche GS-FLX, ABI SOLiD and
LifeTech Ion PGM/Proton sequencers. It supports multiple
operating systems incluidng Linux, Mac OS X, FreeBSD and
Solaris.

processExons: Obtain chromosomal coordiates of each exon using NCBI annotation

Description

Usage

Arguments

Value

Details