Add sampling to eventTable
Return the RxODE coefficients
Jacobian and parameter derivatives
Format rxSolve and related objects as html.
Return the DLL associated with the RxODE object
Initial Values and State values for a RxODE object
Takes a model and expands it to log multiplication
Return the md5 of an RxODE object or file
Create an ODE-based model specification
Prepare Error function for inclusion in RxODE
Parameters specified by the model
Choose the type of product to use in RxODE. These are used in the
RxODE prod
blocks
Add dosing to eventTable
Choose the type of sums to use for RxODE.
Print the rxCoefSolve object
Find the assignments in R expression
Generate an example (template) of a dosing regimen shiny app
Add a return statment to a function.
Assign pointer based on model variables
Use Shiny to help develop an RxODE model
Get Omega^-1 and derivatives
Print rxDll object
Second command in chaining commands
Sample a covariance Matrix from the Posteior Inverse Wishart distribution.
Simulate Parameters from a Theta/Omega specification
Print information about the RxODE object.
Creates an object for calculating Omega/Omega^-1 and derivatives
Fix SymPy expressions to be R parsable expressions
Cleanup anonymous DLLs
Print the rxCoef object
Solves a ODE equation
Split line into multiple lines at + or - breaks
Compile a model if needed
Create an event table object
Check to see if this is an rxSolve object.
Creates a logical matrix for block matrixes.
Get RxODE model from object
Get model properties without compiling it.
Update Solved object with '+'
Return the C file associated with the RxODE object
Setup Python and SymPy for windows
Does the varaible exist in the SymPy Python environment?
Return the expanded expression (via SymPy)
Delete the DLL for the model
Execute Python statement without getting the return value.
Start SymPy
Get the number of cores in a system
Current Condition for RxODE object
Expand if/else clauses into mutiple different types of lines.
Setup Rtools path
All model variables for a RxODE object
Scaled Inverse Chi Squared distribution
Objects exported from other packages
rxChain Chain or add item to solved system of equations
Summary of rxDll object
Use cat when RxODE.verbose is TRUE
Remove sensitivity equations
Get the rxModels information
Permissive or Strict RxODE sytax options
Clear memoise cache for RxODE
Returns a list of physical drives that have been or currently are
mounted to the computer.
This translates the parameters specified by the model in the correct type of solving.
Left handed Variables
Load RxODE object
Return Rtools base
Unload RxODE object
Parse PK function for inclusion in RxODE
Get the theta numbers for the diagonal elements.
Get Omega and Omega^-1 and derivatives
Setup SymPy environment if needed
Validate RxODE
Version and repository for this dparser package.
Setup Pred function based on RxODE object.
Prepare Pred function for inclusion in RxODE
Invert matrix using Rcpp Armadilo.
Setup SymPy functions
Calculate the sensitivity equations for a model
Setup the initial conditions.
Checks if the RxODE object was built with the current build
Determine if the DLL associated with the RxODE object is loaded
Setup a SymPy environment that sets up the specified RxODE model.
Check the type of an object using Rcpp
Setup Windows components for RxODE
Get the normalized model
Print expanded information about the RxODE object.
Options for RxODE
Require namespace, otherwise throw error.
Print x using the message facility
Reload RxODE DLL
Remove Jacobian
Remove INIs
Remove print statements
Return the dimension of the built-in derivatives/inverses
Setup the initial conditions.
Recast model in terms of sum/prod
This function splits a function based on + or - terms
Sync options with RxODE varaibles
State variables
Creates an object for caluclating Omega/Omega^-1 and dervatives
Format theta and eta for parameter estimate values in RxODE
Add undefined variables to SymPy
Delete variable if exists.
Calculate df/dy derivatives
Execute sympy statement.
Remove variables created by RxODE from the SymPy environment.
Return the version of SymPy that is running
Setup SymPy variables
Calculate the full Jacobian for a model
Return a list of reserved functions and variables from sympy
Converts model specification to/from a SymPy language
Translate the model to C code if needed