Get the normalized model
Options for RxODE
Compile a model if needed
Remove print statements
Fix SymPy expressions to be R parsable expressions
State variables
Second command in chaining commands
Use cat when RxODE.verbose is TRUE
Current Condition for RxODE object
Expand if/else clauses into mutiple different types of lines.
Clear memoise cache for RxODE
Parse PK function for inclusion in RxODE
Setup SymPy functions
Objects exported from other packages
This function splits a function based on + or - terms
Start SymPy
Execute Python statement without getting the return value.
Prepare Pred function for inclusion in RxODE
Remove Jacobian
Get the number of cores in a system
Jacobian and parameter derivatives
Setup Rtools path
Format rxSolve and related objects as html.
rxChain Chain or add item to solved system of equations
Cleanup anonymous DLLs
Takes a model and expands it to log multiplication
Initial Values and State values for a RxODE object
Setup Python and SymPy for windows
Delete the DLL for the model
Parameters specified by the model
Load RxODE object
Unload RxODE object
Return the md5 of an RxODE object or file
Check the type of an object using Rcpp
Invert matrix using Rcpp Armadilo.
Prepare Error function for inclusion in RxODE
Return the DLL associated with the RxODE object
Left handed Variables
Get model properties without compiling it.
This translates the parameters specified by the model in the correct type of solving.
Get RxODE model from object
Checks if the RxODE object was built with the current build
All model variables for a RxODE object
Get the rxModels information
Determine if the DLL associated with the RxODE object is loaded
Remove sensitivity equations
Reload RxODE DLL
Return Rtools base
Permissive or Strict RxODE sytax options
Setup the initial conditions.
Print x using the message facility
Get Omega^-1 and derivatives
Require namespace, otherwise throw error.
Setup the initial conditions.
Get the theta numbers for the diagonal elements.
Returns a list of physical drives that have been or currently are
mounted to the computer.
Creates an object for calculating Omega/Omega^-1 and derivatives
Get Omega and Omega^-1 and derivatives
Simulate Parameters from a Theta/Omega specification
Remove INIs
Use Shiny to help develop an RxODE model
Choose the type of product to use in RxODE. These are used in the
RxODE prod
blocks
Choose the type of sums to use for RxODE.
Delete variable if exists.
Solves a ODE equation
Recast model in terms of sum/prod
Calculate df/dy derivatives
Calculate the full Jacobian for a model
Translate the model to C code if needed
Return a list of reserved functions and variables from sympy
Summary of rxDll object
Add undefined variables to SymPy
Converts model specification to/from a SymPy language
Remove variables created by RxODE from the SymPy environment.
Does the varaible exist in the SymPy Python environment?
Calculate the sensitivity equations for a model
Execute sympy statement.
Split line into multiple lines at + or - breaks
Return the dimension of the built-in derivatives/inverses
Creates an object for caluclating Omega/Omega^-1 and dervatives
Setup SymPy environment if needed
Return the expanded expression (via SymPy)
Setup a SymPy environment that sets up the specified RxODE model.
Sync options with RxODE varaibles
Setup Pred function based on RxODE object.
Validate RxODE
Format theta and eta for parameter estimate values in RxODE
Setup SymPy variables
Return the version of SymPy that is running
Setup Windows components for RxODE
Version and repository for this dparser package.
Print expanded information about the RxODE object.
Check to see if this is an rxSolve object.
Sample a covariance Matrix from the Posteior Inverse Wishart distribution.
Add dosing to eventTable
Add sampling to eventTable
Assign pointer based on model variables
Generate an example (template) of a dosing regimen shiny app
Find the assignments in R expression
Update Solved object with '+'
Print rxDll object
Return the RxODE coefficients
Return the C file associated with the RxODE object
Create an ODE-based model specification
Create an event table object
Add a return statment to a function.
Print information about the RxODE object.
Scaled Inverse Chi Squared distribution
Print the rxCoefSolve object
Print the rxCoef object
Creates a logical matrix for block matrixes.