Add sampling to eventTable
Objects exported from other packages
Scaled Inverse Chi Squared distribution
Find the assignments in R expression
Generate an example (template) of a dosing regimen shiny app
Print the rxCoefSolve object
rxChain Chain or add item to solved system of equations
Use cat when RxODE.verbose is TRUE
Expand if/else clauses into mutiple different types of lines.
Print rxDll object
Clear memoise cache for RxODE
Left handed Variables
This translates the parameters specified by the model in the correct type of solving.
Delete the DLL for the model
Get the number of cores in a system
Require namespace, otherwise throw error.
Checks if the RxODE object was built with the current build
Get RxODE model from object
Get model properties without compiling it.
Determine if the DLL associated with the RxODE object is loaded
Load RxODE object
Parameters specified by the model
Choose the type of product to use in RxODE. These are used in the
RxODE prod
blocks
Unload RxODE object
Prepare Error function for inclusion in RxODE
Check to see if this is an rxSolve object.
Free the C solving information.
Simulate Parameters from a Theta/Omega specification
Update Solved object with '+'
Solves a ODE equation
Print the rxCoef object
Print information about the RxODE object.
Split line into multiple lines at + or - breaks
Cleanup anonymous DLLs
Get the theta numbers for the diagonal elements.
Second command in chaining commands
Format rxSolve and related objects as html.
Get Omega and Omega^-1 and derivatives
All model variables for a RxODE object
Return the expanded expression (via SymPy)
Get the rxModels information
Fix SymPy expressions to be R parsable expressions
Recast model in terms of sum/prod
Sync options with RxODE varaibles
Permissive or Strict RxODE sytax options
Return the version of SymPy that is running
Add undefined variables to SymPy
Version and repository for this dparser package.
Initial Values and State values for a RxODE object
Execute Python statement without getting the return value.
Returns a list of physical drives that have been or currently are
mounted to the computer.
Setup Python and SymPy for windows
Setup the initial conditions.
Does the varaible exist in the SymPy Python environment?
Use Shiny to help develop an RxODE model
Create an ODE-based model specification
Converts model specification to/from a SymPy language
Format theta and eta for parameter estimate values in RxODE
Setup Windows components for RxODE
Add dosing to eventTable
Print expanded information about the RxODE object.
Execute sympy statement.
Get the normalized model
Options for RxODE
Print x using the message facility
Remove variables created by RxODE from the SymPy environment.
Setup SymPy functions
Add a return statment to a function.
Assign pointer based on model variables
Translate the model to C code if needed
Return a list of reserved functions and variables from sympy
Reload RxODE DLL
Choose the type of sums to use for RxODE.
Jacobian and parameter derivatives
Validate RxODE
Summary of rxDll object
Return the DLL associated with the RxODE object
Setup the initial conditions.
Get Omega^-1 and derivatives
Creates an object for calculating Omega/Omega^-1 and derivatives
Invert matrix using Rcpp Armadilo.
Check the type of an object using Rcpp
Calculate df/dy derivatives
Start SymPy
Delete variable if exists.
Takes a model and expands it to log multiplication
Setup SymPy variables
Return the md5 of an RxODE object or file
Parse PK function for inclusion in RxODE
This function splits a function based on + or - terms
Prepare Pred function for inclusion in RxODE
State variables
Return the dimension of the built-in derivatives/inverses
Creates an object for caluclating Omega/Omega^-1 and dervatives
Setup a SymPy environment that sets up the specified RxODE model.
Calculate the sensitivity equations for a model
Setup SymPy environment if needed
Setup Pred function based on RxODE object.
Return the RxODE coefficients
Create an event table object
Sample a covariance Matrix from the Posteior Inverse Wishart distribution.
Creates a logical matrix for block matrixes.
Return the C file associated with the RxODE object
Compile a model if needed
Current Condition for RxODE object