Add dosing to eventTable
Remove print statements
Remove Jacobian
Print the rxCoefSolve object
Print rxDll object
Setup C++14 support in windows (required for nlmixr)
Combining event tables
Sequence of event tables
Jacobian and parameter derivatives
Delete the DLL for the model
Setup Rtools path
Use cat when RxODE.verbose is TRUE
Get RxODE model from object
Event translation for RxODE
Get the normalized model
Create an event table object
Get model properties without compiling it.
Get the rxModels information
Find the assignments in R expression
rxChain Chain or add item to solved system of equations
Event Table Function
Repeat an RxODE event table
Choose the type of sums to use for RxODE.
Remove sensitivity equations
Print information about the RxODE object.
Second command in chaining commands
Setup the initial conditions.
Unload RxODE object
Expand if/else clauses into mutiple different types of lines.
Print the rxCoef object
Simulate Parameters from a Theta/Omega specification
Solving \& Simulation of a ODE/solved system (and solving options) equation
Cleanup anonymous DLLs
Return the C file associated with the RxODE object
Creates a logical matrix for block matrixes.
Compile a model if needed
Checks if the RxODE object was built with the current build
Calculate the full Jacobian for a model
Determine if the DLL associated with the RxODE object is loaded
Return the md5 of an RxODE object or file
Generate an example (template) of a dosing regimen shiny app
First Order Expansion of ETA
All model variables for a RxODE object
Check to see if this is an rxSolve object.
Clear memoise cache for RxODE
Delete variable if exists.
Update Solved object with '+'
Permissive or Strict RxODE sytax options
Optimize RxODE for computer evaluation
Check to see if this is an rxEt object.
Add a return statment to a function.
Returns a list of physical drives that have been or currently are
mounted to the computer.
Assign pointer based on model variables
Current Condition for RxODE object
Calculate df/dy derivatives
Get the number of cores in a system
Setup a SymPy environment that sets up the specified RxODE model.
Invert matrix using Rcpp Armadilo.
Free the C solving information.
Setup SymPy environment if needed
Objects exported from other packages
Scaled Inverse Chi Squared distribution
Check the type of an object using Rcpp
Version and repository for this dparser package.
Options for RxODE
Split line into multiple lines at + or - breaks
Fix SymPy expressions to be R parsable expressions
Get Omega^-1 and derivatives
Add undefined variables to SymPy
Return the expanded expression (via SymPy)
Setup Python and SymPy for windows
Setup SymPy variables
Parameters specified by the model
Return the DLL associated with the RxODE object
Return the version of SymPy that is running
RxODE progress bar functions
Load RxODE object
Prepare Error function for inclusion in RxODE
Format rxSolve and related objects as html.
This function splits a function based on + or - terms
Reload RxODE DLL
Initial Values and State values for a RxODE object
Stack a solved object for things like ggplot
Execute Python statement without getting the return value.
Does the varaible exist in the SymPy Python environment?
Parse PK function for inclusion in RxODE
Left handed Variables
This translates the parameters specified by the model in the correct type of solving.
Prepare Pred function for inclusion in RxODE
Setup the initial conditions.
Use Shiny to help develop an RxODE model
Creates an object for calculating Omega/Omega^-1 and derivatives
Require namespace, otherwise throw error.
Choose the type of product to use in RxODE. These are used in the
RxODE prod
blocks
Setup Pred function based on RxODE object.
Return a list of reserved functions and variables from sympy
Return the dimension of the built-in derivatives/inverses
Calculate the sensitivity equations for a model
Translate the model to C code if needed
Start SymPy
Converts model specification to/from a SymPy language
Setup Windows components for RxODE
Sync options with RxODE varaibles
State variables
Get the RxODE temporary directory
Print expanded information about the RxODE object.
Recast model in terms of sum/prod
Remove variables created by RxODE from the SymPy environment.
Execute sympy statement.
This creates the dv/dx RxODE model for a linear solved system
Setup SymPy functions
Use model object in your package
Validate RxODE
Summary of rxDll object
type_sum function for units
Sample a covariance Matrix from the Posteior Inverse Wishart distribution.
Coerce object to data.frame
Add sampling to eventTable
Convert to tbl
Find power THETAs for appropriate scaling
Return the RxODE coefficients
Remove INIs
Clear/Set pipeline
Create an ODE-based model specification