Add sampling to eventTable
Remove INIs
Return the RxODE coefficients
Clear/Set pipeline
Sample a covariance Matrix from the Posteior Inverse Wishart distribution.
Convert to tbl
Find power THETAs for appropriate scaling
Create an ODE-based model specification
Coerce object to data.frame
Add dosing to eventTable
Create an event table object
Find the assignments in R expression
Remove print statements
Update Solved object with '+'
Check to see if this is an rxSolve object.
Remove Jacobian
Repeat an RxODE event table
rxChain Chain or add item to solved system of equations
Combining event tables
Second command in chaining commands
Remove sensitivity equations
Setup Rtools path
Add a return statment to a function.
Print the rxCoefSolve object
Event Table Function
Calculate the full Jacobian for a model
Print information about the RxODE object.
Jacobian and parameter derivatives
Delete the DLL for the model
Print the rxCoef object
Setup C++14 support in windows (required for nlmixr)
Use cat when RxODE.verbose is TRUE
Current Condition for RxODE object
Checks if the RxODE object was built with the current build
Determine if the DLL associated with the RxODE object is loaded
Assign pointer based on model variables
Generate an example (template) of a dosing regimen shiny app
Event translation for RxODE
Sequence of event tables
Check to see if this is an rxEt object.
Scaled Inverse Chi Squared distribution
Unload RxODE object
Objects exported from other packages
Print rxDll object
All model variables for a RxODE object
Reload RxODE DLL
Return the md5 of an RxODE object or file
RxODE progress bar functions
Get the number of cores in a system
Check the type of an object using Rcpp
Invert matrix using Rcpp Armadilo.
First Order Expansion of ETA
Expand if/else clauses into mutiple different types of lines.
Cleanup anonymous DLLs
Left handed Variables
Creates a logical matrix for block matrixes.
Return the C file associated with the RxODE object
Optimize RxODE for computer evaluation
Compile a model if needed
Clear memoise cache for RxODE
Parameters specified by the model
Require namespace, otherwise throw error.
Options for RxODE
Choose the type of product to use in RxODE. These are used in the
RxODE prod
blocks
Prepare Error function for inclusion in RxODE
Choose the type of sums to use for RxODE.
Setup the initial conditions.
This translates the parameters specified by the model in the correct type of solving.
Permissive or Strict RxODE sytax options
Load RxODE object
Return the DLL associated with the RxODE object
Get model properties without compiling it.
Format rxSolve and related objects as html.
Initial Values and State values for a RxODE object
Returns a list of physical drives that have been or currently are
mounted to the computer.
Add undefined variables to SymPy
Simulate Parameters from a Theta/Omega specification
Solving \& Simulation of a ODE/solved system (and solving options) equation
Get Omega^-1 and derivatives
Recast model in terms of sum/prod
Return the dimension of the built-in derivatives/inverses
State variables
Creates an object for calculating Omega/Omega^-1 and derivatives
Setup the initial conditions.
Use Shiny to help develop an RxODE model
Return a list of reserved functions and variables from sympy
Version and repository for this dparser package.
Calculate the sensitivity equations for a model
Setup Python and SymPy for windows
Start SymPy
Setup Pred function based on RxODE object.
Get RxODE model from object
Get the rxModels information
Delete variable if exists.
Parse PK function for inclusion in RxODE
Prepare Pred function for inclusion in RxODE
Calculate df/dy derivatives
Setup a SymPy environment that sets up the specified RxODE model.
Get the normalized model
This function splits a function based on + or - terms
Stack a solved object for things like ggplot
Split line into multiple lines at + or - breaks
Remove variables created by RxODE from the SymPy environment.
Free the C solving information.
Execute sympy statement.
Fix SymPy expressions to be R parsable expressions
Use model object in your package
Return the expanded expression (via SymPy)
Execute Python statement without getting the return value.
Setup SymPy variables
Setup SymPy environment if needed
Return the version of SymPy that is running
Setup SymPy functions
Validate RxODE
This creates the dv/dx RxODE model for a linear solved system
Does the varaible exist in the SymPy Python environment?
Sync options with RxODE varaibles
Get the RxODE temporary directory
Summary of rxDll object
type_sum function for units
Converts model specification to/from a SymPy language
Translate the model to C code if needed
Setup Windows components for RxODE
Print expanded information about the RxODE object.