Remove INIs
Expand additional doses
Remove sensitivity equations
Remove print statements
Convert an event table to a data.table
Add sampling to eventTable
Event Table Function
Turn on/off warnings for ID sorting.
Create an ODE-based model specification
Add dosing to eventTable
Combining event tables
Remove Jacobian
Repeat an RxODE event table
Generate an example (template) of a dosing regimen shiny app
Print information about the RxODE object.
Force using base order for RxODE radix sorting
Update Solved object with '+'
Event translation for RxODE
Setup C++14 support in windows (required for nlmixr)
Calculate the full Jacobian for a model
Create an event table object
Setup Rtools path
Print rxDll object
Find the assignments in R expression
Creates a logical matrix for block matrixes.
Check to see if this is an rxEt object.
Get the number of cores in a system
Check to see if this is an rxSolve object.
Return the C file associated with the RxODE object
Objects exported from other packages
Use cat when RxODE.verbose is TRUE
Current Condition for RxODE object
Clear memoise cache for RxODE
Get the normalized model
Setup the initial conditions.
Reload RxODE DLL
Setup the initial conditions.
Get model properties without compiling it.
Re export of pillar_shaft
Sequence of event tables
Empty Guide
Get the rxModels information
Execute sympy statement.
rxChain Chain or add item to solved system of equations
Require namespace, otherwise throw error.
Return the dimension of the built-in derivatives/inverses
Delete the DLL for the model
EVID formatting for tibble and other places.
Print the rxCoef object
Return the expanded expression (via SymPy)
Left handed Variables
Print the rxCoefSolve object
Unload RxODE object
Pillar shaft for rxRateDur
Does the variable exist in the SymPy Python environment?
Compile a model if needed
Determine if the DLL associated with the RxODE object is loaded
Second command in chaining commands
Cleanup anonymous DLLs by unloading them
Parameters specified by the model
Return the DLL associated with the RxODE object
Sync options with RxODE variables
Return the version of SymPy that is running
Permissive or Strict RxODE syntax options
Prepare Error function for inclusion in RxODE
Jacobian and parameter derivatives
Solving \& Simulation of a ODE/solved system (and solving options) equation
Validate RxODE
Scaled Inverse Chi Squared distribution
Add a return statement to a function.
Free the C solving/parsing information.
Version and repository for this dparser package.
Optimize RxODE for computer evaluation
Load RxODE object
Checks if the RxODE object was built with the current build
Check the type of an object using Rcpp
Returns a list of physical drives that have been or currently are
mounted to the computer.
Options for RxODE
Parse PK function for inclusion in RxODE
Assign pointer based on model variables
Allow unloading of dlls
Expand if/else clauses into multiple different types of lines.
Recast model in terms of sum/prod
Use Shiny to help develop an RxODE model
Stack a solved object for things like ggplot
Simulate Parameters from a Theta/Omega specification
Prepare Pred function for inclusion in RxODE
Get RxODE model from object
Format rxSolve and related objects as html.
State variables
First Order Expansion of ETA
Calculate df/dy derivatives
Get the RxODE temporary directory
Execute Python statement without getting the return value.
Setup Python and SymPy for windows
Converts model specification to/from a SymPy language
Return the md5 of an RxODE object or file
Add undefined variables to SymPy
This translates the parameters specified by the model in the correct type of solving.
Invert matrix using RcppArmadillo.
Lock/unlocking of RxODE dll file
Choose the type of product to use in RxODE. These are used in the
RxODE prod
blocks
Set Initial conditions to time zero instead of the first observed/dosed time
Initial Values and State values for a RxODE object
Set timing for progress bar
RxODE progress bar functions
Setup Windows components for RxODE
Fix SymPy expressions to be R parsable expressions
All model variables for a RxODE object
Split line into multiple lines at + or - breaks
Creates a rxRateDur object
Remove variables created by RxODE from the SymPy environment.
Delete variable if exists.
This function splits a function based on + or - terms
Setup SymPy environment if needed
Return a list of reserved functions and variables from sympy
Translate the model to C code if needed
This creates the dv/dx RxODE model for a linear solved system
Choose the type of sums to use for RxODE.
Unload all RxODE Dlls that are not locked for solving.
Use model object in your package
Setup SymPy functions
Use Radix Sort when possible
Get Omega^-1 and derivatives
Creates an object for calculating Omega/Omega^-1 and derivatives
Setup Pred function based on RxODE object.
type_sum function for units
Calculate the sensitivity equations for a model
Setup a SymPy environment that sets up the specified RxODE model.
Print expanded information about the RxODE object.
Start SymPy
Setup SymPy variables
Summary of rxDll object
Clear/Set pipeline
Find power THETAs for appropriate scaling
Coerce object to data.frame
Convert to tbl
Return the RxODE coefficients
Sample a covariance Matrix from the Posterior Inverse Wishart
distribution.