Add sampling to eventTable
Convert an event table to a data.table
Find power THETAs for appropriate scaling
Coerce object to data.frame
Create an ODE-based model specification
Sample a covariance Matrix from the Posterior Inverse Wishart
distribution.
Add dosing to eventTable
Return the RxODE coefficients
Clear/Set pipeline
Convert to tbl
Event Table Function
Remove Jacobian
Remove sensitivity equations
Repeat an RxODE event table
Calculate the full Jacobian for a model
Remove print statements
Setup Rtools path
Turn on/off warnings for ID sorting.
Expand additional doses
Sequence of event tables
Force using base order for RxODE radix sorting
Second command in chaining commands
rxChain Chain or add item to solved system of equations
Create an event table object
Remove INIs
Re export of pillar_shaft
First Order Expansion of ETA
Combining event tables
Empty Guide
Event translation for RxODE
Print the rxCoef object
Compile a model if needed
Cleanup anonymous DLLs by unloading them
Pillar shaft for rxRateDur
Expand if/else clauses into multiple different types of lines.
Get RxODE model from object
Print information about the RxODE object.
Invert matrix using RcppArmadillo.
Generate an example (template) of a dosing regimen shiny app
Allow unloading of dlls
Setup C++14 support in windows (required for nlmixr)
Objects exported from other packages
Print the rxCoefSolve object
Find the assignments in R expression
Update Solved object with '+'
Initial Values and State values for a RxODE object
Permissive or Strict RxODE syntax options
Check to see if this is an rxEt object.
Current Condition for RxODE object
Print rxDll object
Options for RxODE
Optimize RxODE for computer evaluation
Format rxSolve and related objects as html.
Get the number of cores in a system
Split line into multiple lines at + or - breaks
Scaled Inverse Chi Squared distribution
Use Shiny to help develop an RxODE model
Simulate Parameters from a Theta/Omega specification
Check to see if this is an rxSolve object.
Add a return statement to a function.
Stack a solved object for things like ggplot
Use cat when RxODE.verbose is TRUE
Prepare Pred function for inclusion in RxODE
Parse PK function for inclusion in RxODE
Return the DLL associated with the RxODE object
Return the md5 of an RxODE object or file
This function splits a function based on + or - terms
This creates the dv/dx RxODE model for a linear solved system
Returns a list of physical drives that have been or currently are
mounted to the computer.
Left handed Variables
Determine if the DLL associated with the RxODE object is loaded
Load RxODE object
Lock/unlocking of RxODE dll file
Jacobian and parameter derivatives
RxODE progress bar functions
Creates a rxRateDur object
Assign pointer based on model variables
Delete the DLL for the model
Validate RxODE
Setup SymPy variables
Return a list of reserved functions and variables from sympy
Return the C file associated with the RxODE object
Start SymPy
Fix SymPy expressions to be R parsable expressions
EVID formatting for tibble and other places.
State variables
Setup SymPy functions
Creates a logical matrix for block matrixes.
Choose the type of product to use in RxODE. These are used in the
RxODE prod
blocks
Set Initial conditions to time zero instead of the first observed/dosed time
Choose the type of sums to use for RxODE.
Checks if the RxODE object was built with the current build
Get the normalized model
Version and repository for this dparser package.
Parameters specified by the model
Set timing for progress bar
Setup SymPy environment if needed
Unload RxODE object
Calculate the sensitivity equations for a model
Execute sympy statement.
Setup the initial conditions.
Get the rxModels information
Get model properties without compiling it.
Clear memoise cache for RxODE
Setup the initial conditions.
This translates the parameters specified by the model in the correct type of solving.
Use model object in your package
Check the type of an object using Rcpp
Prepare Error function for inclusion in RxODE
Require namespace, otherwise throw error.
Reload RxODE DLL
Return the dimension of the built-in derivatives/inverses
Recast model in terms of sum/prod
Add undefined variables to SymPy
Calculate df/dy derivatives
Sync options with RxODE variables
Setup Pred function based on RxODE object.
Setup a SymPy environment that sets up the specified RxODE model.
Return the version of SymPy that is running
Setup Python and SymPy for windows
Get Omega^-1 and derivatives
Get the RxODE temporary directory
type_sum function for units
Execute Python statement without getting the return value.
Creates an object for calculating Omega/Omega^-1 and derivatives
Use Radix Sort when possible
All model variables for a RxODE object
Setup Windows components for RxODE
Solving \& Simulation of a ODE/solved system (and solving options) equation
Remove variables created by RxODE from the SymPy environment.
Return the expanded expression (via SymPy)
Converts model specification to/from a SymPy language
Free the C solving/parsing information.
Translate the model to C code if needed
Print expanded information about the RxODE object.
Unload all RxODE Dlls that are not locked for solving.
Summary of rxDll object
Does the variable exist in the SymPy Python environment?
Delete variable if exists.