Register a method for a suggested dependency
Expand additional doses
Generate an example (template) of a dosing regimen shiny app
Force using base order for RxODE radix sorting
Finalize RxODE pred based on symengine saved info
Gammap: normalized lower incomplete gamma function
Sample a covariance Matrix from the Posterior Inverse Wishart
distribution.
Generate pieces for EBE only problem
Event Table Function
Get/Set the number of threads that RxODE uses
Generate the d(err)/d(eta) values for FO related methods
Scaled Inverse Chi Squared distribution
Get the state information for the current model
Generate pieces for FOCEi inner problem
Setup Pred function based on RxODE object.
Combining event tables
Turn on/off warnings for ID sorting.
Allow unloading of dlls
One correlation sample from the Inverse Wishart distribution
Create an event table object
Repeat an RxODE event table
Find the assignments in R expression
Generate the ETA sensitivities for FO related methods
With one sink, then release
Add a return statment to a function.
Determine if the DLL associated with the RxODE object is loaded
Parameters specified by the model
Objects exported from other packages
Generate FOCE without interaction
Gammaq: normalized upper incomplete gamma function
Check to see if this is an rxEt object.
gammaqInv and gammaqInva: Inverses of normalized gammaq function
Sequence of event tables
Generate Augmented pred/err RxODE model
Setup the initial conditions.
Use cat when RxODE.verbose is TRUE
Empty Guide
Simulate chi-squared variable from threefry generator
Remove INIs
Set the preferred factoring by state
EVID formatting for tibble and other places.
Return the dimension of the built-in derivatives/inverses
Get the linear compartment model true function
rxChain Chain or add item to solved system of equations
Faster expand.grid
Return the md5 of an RxODE object or file
Event translation for RxODE
Get model properties without compiling it.
One correlation sample from the LKJ distribution
Reload RxODE DLL
logit and inverse logit (expit) functions
This will create the cache directory for RxODE to save between sessions
Check to see if this is an rxSolve object.
rxTheme is the RxODE theme for plots
lowergamma: upper incomplete gamma function
Setup Windows components for RxODE
Add to RxODE's derivative tables
Delete the DLL for the model
Load a model into a symengine environment
Prune branches (ie if/else) from RxODE
Simulate exponential variable from threefry generator
Compile a model if needed
Initial Values and State values for a RxODE object
Lock/unlocking of RxODE dll file
Creates a rxRateDur object
Assign pointer based on model variables
Left handed Variables
Get list of supported functions
Invert matrix using RcppArmadillo.
Current Condition for RxODE object
Creates an object for calculating Omega/Omega^-1 and derivatives
Parse PK function for inclusion in RxODE
Set timing for progress bar
Recast model in terms of sum/prod
Remove print statements
Print information about the RxODE object.
Prepare Pred function for inclusion in RxODE
Defunct setting of sum
Silence some of RxODE's C/C++ messages
Simulate F variable from threefry generator
Simulate beta variable from threefry generator
probit and inverse probit functions
gammapInv and gammapInva: Inverses of normalized gammap function
gammapDer: derivative of gammap
Simulate Binomial variable from threefry generator
Temporarily set options then restore them while running code
Simulate uniform variable from threefry generator
Calculate derived parameters for the 1-, 2-, and 3- compartment
linear models.
Format rxSolve and related objects as html.
Cumulative distribution of standard normal
Update Solved object with '+'
Print rxDll object
Simulate geometric variable from threefry generator
Use Shiny to help develop an RxODE model
Return the C file associated with the RxODE object
Creates a logical matrix for block matrixes.
Checks if the RxODE object was built with the current build
Simulate Cauchy variable from threefry generator
Simulate random normal variable from threefry/vandercorput generator
Load RxODE object
Simulate random Poisson variable from threefry generator
Jacobian and parameter derivatives
Wrap a test in RxODE
Get the normalized model
Return the DLL associated with the RxODE object
Setup the initial conditions.
Simulate student t variable from threefry generator
This sets the inductive linearization strategy for matrix building
Prepare Error function for inclusion in RxODE
Sync options with RxODE variables
Stack a solved object for things like ggplot
Dosing/Amt geom/stat
State variables
Simulate a from a Poisson process
Get the RxODE temporary directory
Temporarily set options then restore them while running code
Setup Rtools path
Creates a package from compiled RxODE models
Censoring geom/stat
Version and repository for this dparser package.
Unload RxODE object
This function splits a function based on + or - terms
Check the type of an object using Rcpp
Get RxODE model from object
Create a random "normal" matrix using vandercorput generator
Optimize RxODE for computer evaluation
Unloads all RxODE compiled DLLs
RxODE progress bar functions
Print the rxCoef object
Print expanded information about the RxODE object.
Cleanup anonymous DLLs by unloading them
Second command in chaining commands
RxODE to symengine environment
Translate the model to C code if needed
Free the C solving/parsing information.
Add user function to RxODE
Clear memoise cache for RxODE
Simulate gamma variable from threefry generator
Expand if/else clauses into mutiple different types of lines.
Simulate Weibull variable from threefry generator
Simulate from a (truncated) multivariate normal
Summary of rxDll object
Require namespace, otherwise throw error.
Generate pred-only SAEM RxODE model
Returns a list of physical drives that have been or currently are
mounted to the computer.
All model variables for a RxODE object
Get the rxModels information
Solving & Simulation of a ODE/solved system (and solving options) equation
Defunct setting of product
Set Initial conditions to time zero instead of the first observed/dosed time
Simulate Parameters from a Theta/Omega specification
Respect suppress messages
Use model object in your package
type_sum function for units
uppergamma: upper incomplete gamma function
Get Omega^-1 and derivatives
Validate RxODE
This allows easy validation/qualification of nlmixr by running the
testing suite on your system.
Clear/Set pipeline
Finalize inner RxODE based on symengine saved info
Add sampling to eventTable
Convert to tbl
Convert an event table to a data.table
Return the RxODE coefficients
Coerce object to data.frame
Create an ODE-based model specification
Add dosing to eventTable