SGFeatureCounts

<code>SummarizedExperiment</code> with <code>SGFeatures</code>
as <code>rowData</code> and assays &#147;counts&#148;, &#147;FPKM&#148;


Creates an instance of S4 class <code>SGFeatureCounts</code> for storing
compatible splice graph feature counts.


RNA-seq data are informative for the analysis of known and
novel transcript isoforms. While the short length of RNA-seq
reads limits the ability to predict and quantify full-length
transcripts, short read data are well suited for the analysis
of individual alternative transcripts events (e.g. inclusion
or skipping of a cassette exon). The SGSeq package enables the
prediction, quantification and visualization of alternative
transcript events from BAM files.

SGFeatureCounts: Constructor function for S4 class `SGFeatureCounts`

Description

Usage

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Examples