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SGSeq (version 1.0.6)

Prediction, quantification and visualization of alternative transcript events from RNA-seq data

Description

RNA-seq data are informative for the analysis of known and novel transcript isoforms. While the short length of RNA-seq reads limits the ability to predict and quantify full-length transcripts, short read data are well suited for the analysis of individual alternative transcripts events (e.g. inclusion or skipping of a cassette exon). The SGSeq package enables the prediction, quantification and visualization of alternative transcript events from BAM files.

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Version

1.0.6

License

Artistic-2.0

Last Published

January 1st, 1970

Functions in SGSeq (1.0.6)