TxFeatures

<code>GRanges</code> with known strand (&#147;+&#148;, &#147;-&#148;)

Character vector or factor taking values in
<code>J</code>, <code>I</code>, <code>F</code>, <code>L</code>, <code>U</code>

type

<code>CharacterList</code> of transcript names or <code>NULL</code>

txName

<code>CharacterList</code> of gene names or <code>NULL</code>

geneName


Creates an instance of S4 class <code>TxFeatures</code> for storing
transcript features.


RNA-seq data are informative for the analysis of known and
novel transcript isoforms. While the short length of RNA-seq
reads limits the ability to predict and quantify full-length
transcripts, short read data are well suited for the analysis
of individual alternative transcripts events (e.g. inclusion
or skipping of a cassette exon). The SGSeq package enables the
prediction, quantification and visualization of alternative
transcript events from BAM files.

TxFeatures: Constructor function for S4 class `TxFeatures`

Description

Usage

Arguments

Value

Details

Examples