findOverlapsRanges

<code>IRanges</code> or <code>IRangesList</code> object

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subject

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Modified <code>findOverlaps</code> function for <code>IRanges</code>,
<code>IRangesList</code> objects that behaves analogous to
<code>findOverlaps</code> for <code>GRanges</code>, <code>GRangesList</code> objects.


internal

RNA-seq data are informative for the analysis of known and
novel transcript isoforms. While the short length of RNA-seq
reads limits the ability to predict and quantify full-length
transcripts, short read data are well suited for the analysis
of individual alternative transcripts events (e.g. inclusion
or skipping of a cassette exon). The SGSeq package enables the
prediction, quantification and visualization of alternative
transcript events from BAM files.

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findOverlapsRanges: Modified `findOverlaps` function for `IRanges`, `IRangesList` objects

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