junctionCompatible

junctions

<code>IRangesList</code> of introns, one entry per fragment

frag_intron

Logical indicating whether counts or indices of
compatible fragments should be returned

counts


Identify fragments compatible with splice junctions.


internal

RNA-seq data are informative for the analysis of known and
novel transcript isoforms. While the short length of RNA-seq
reads limits the ability to predict and quantify full-length
transcripts, short read data are well suited for the analysis
of individual alternative transcripts events (e.g. inclusion
or skipping of a cassette exon). The SGSeq package enables the
prediction, quantification and visualization of alternative
transcript events from BAM files.

junctionCompatible: Compatible fragment counts for splice junctions

Description

Usage

Arguments

Value