predictCandidatesInternal

junctions

<code>IRanges</code> of genomic regions with minimal read
coverage required for internal exon prediction

islands


Identify candidate internal exons based on previously identified
splice junctions and regions with minimal read coverage required
for internal exon prediction.


internal

RNA-seq data are informative for the analysis of known and
novel transcript isoforms. While the short length of RNA-seq
reads limits the ability to predict and quantify full-length
transcripts, short read data are well suited for the analysis
of individual alternative transcripts events (e.g. inclusion
or skipping of a cassette exon). The SGSeq package enables the
prediction, quantification and visualization of alternative
transcript events from BAM files.

predictCandidatesInternal: Identify candidate internal exons

Description

Usage

Arguments

Value