Find SNV/Indel differences between two bam files with near relationship
Description
This package is to find SNV/Indel differences between two
bam files with near relationship in a way of pairwise
comparison thourgh each base position across the genome region
of interest. The difference is inferred by fisher test and
euclidean distance, the input of which is the base count
(A,T,G,C) in a given position and read counts for indels that
span no less than 2bp on both sides of indel region.