SICtools-package

SICtools


             This package is to find SNV/Indel differences between two bam files with near relationship
             in a way of pairwise comparison thourgh each base position across the genome region of interest. 
             The difference is inferred by fisher test and euclidean distance, the input of which is the base
             count (A,T,G,C) in a given position and read counts for indels that span no less than 2bp on both 
             sides of indel region called from samtools+bcftools


 SICtools 

This package is to find SNV/Indel differences between two
bam files with near relationship in a way of pairwise
comparison thourgh each base position across the genome region
of interest. The difference is inferred by fisher test and
euclidean distance, the input of which is the base count
(A,T,G,C) in a given position and read counts for indels that
span no less than 2bp on both sides of indel region.

Xiaobin Xing

Find SNV/Indel differences between two bam files with near relationship

SICtools-package function

This package is to find SNV/Indel differences between two bam files with near relationship
             in a way of pairwise comparison thourgh each base position across the genome region of interest. 
             The difference is inferred by fisher test and euclidean distance, the input of which is the base
             count (A,T,G,C) in a given position and read counts for indels that span no less than 2bp on both 
             sides of indel region called from samtools+bcftools

SICtools-package: tools for SNV/Indel Comparison between two bam files with near relationship

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Arguments

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