<p>A R list containing subclone configurations in matrix 
form for 1 to 5 subclones. For each matrix, each column 
corresponds to a subclone and each row corresponds to a 
variant's allocation across all subclones. For example, 
the first row of each matrix is a vector of 1's to 
represent clonal variants, variants present in all subclones.</p>

datasets

Cluster user-supplied somatic read counts with corresponding allele-specific copy number and tumor purity to infer feasible underlying intra-tumor heterogeneity in terms of  number of subclones, multiplicity, and allocation (Little et al. (2019) <doi:10.1186/s13073-019-0643-9>).

Paul Little

SMASH

Subclone Multiplicity Allocation and Somatic Heterogeneity

eS function

<p>An object of class <code>list</code> of length 5.</p>

eS: A collection of pre-defined subclone configurations.

Description

Usage

Arguments

Format