Reactome.Symbol.Igraph

REACTOME


This is an Igraph network that was created using the REACTOME protein-protein 
interaction database.


datasets

This package builds on the Epimods framework which
facilitates finding weighted subnetworks ("modules") on
Illumina Infinium 27k arrays using the SpinGlass algorithm, as
implemented in the iGraph package. We have created a class of
gene centric annotations associated with p-values and effect
sizes and scores from any researchers prior statistical results
to find functional modules.

Neil Ari Wijetunga

SMITE

Significance-based Modules Integrating the Transcriptome and
Epigenome

Reactome.Symbol.Igraph function

An igraph object with 5770 nodes and 114288 edges
  <dl>
    <dt>nodes</dt><dd>gene names as gene symbols</dd> <dt>edges</dt><dd>paired genes that interact</dd> </dl> 

Format

Source

This is an Igraph network that was created using the REACTOME protein-protein 
interaction database.

Reactome.Symbol.Igraph: An Igraph network for REACTOME with nodes as gene symbols

Description

Usage

Arguments

Value

Format

Source

Details

References

Examples