extractModules

extractModules,PvalueAnnotation-method


An S4 object of class PvalueAnnotation for which Spinglass or BioNet has already been run.


pvalue_annotation


A numeric vector specifying one or more module to display


which_module


Having identfied modules within a Pvalue annotation, this function allows the user to display 1 or more of the module genes.


This package builds on the Epimods framework which
facilitates finding weighted subnetworks ("modules") on
Illumina Infinium 27k arrays using the SpinGlass algorithm, as
implemented in the iGraph package. We have created a class of
gene centric annotations associated with p-values and effect
sizes and scores from any researchers prior statistical results
to find functional modules.

Neil Ari Wijetunga

SMITE

Significance-based Modules Integrating the Transcriptome and
Epigenome

extractModules function

An S4 object of class PvalueAnnotation for which Spinglass or BioNet has already been run.

A numeric vector specifying one or more module to display

Having identfied modules within a Pvalue annotation, this function allows the user to display 1 or more of the module genes.

extractModules: View specific modules within a PvalueAnnotation

Description

Usage

Arguments

Value

See Also

Examples