hg19_genes_bed

hg19_genes


A gene anntation BED file containing columns for RefSeq name and Gene Symbol


datasets

This package builds on the Epimods framework which
facilitates finding weighted subnetworks ("modules") on
Illumina Infinium 27k arrays using the SpinGlass algorithm, as
implemented in the iGraph package. We have created a class of
gene centric annotations associated with p-values and effect
sizes and scores from any researchers prior statistical results
to find functional modules.

Neil Ari Wijetunga

SMITE

Significance-based Modules Integrating the Transcriptome and
Epigenome

hg19_genes_bed function

A data frame with 41633 observations on the following 6 variables.
  <dl>
    <dt>column 1</dt><dd>a character vector for chromosome</dd> <dt>column 2 </dt><dd>an integer vector for start position</dd> <dt>column 3 </dt><dd>an integer vector for end position</dd> <dt>column 4 </dt><dd>an character vector for RefSeq gene names</dd> <dt>column 5 </dt><dd>an character vector for Gene Symbol names</dd> <dt>column 6 </dt><dd>an character vector for strand</dd> </dl> 

Format

Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. 
The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 2004 Jan 1;32
(Database issue):D493-6.

Source

A gene anntation BED file containing columns for RefSeq name and Gene Symbol

hg19_genes_bed: A bed file annotating Refseq genes for the hg19 genome build

Description

Usage

Arguments

Value

Format

Source

Details

References

Examples